DensiTree: making sense of sets of phylogenetic trees.

Bouckaert, Remco

dc.contributor.author	Bouckaert, Remco	en
dc.coverage.spatial	England	en
dc.date.accessioned	2012-03-01T20:51:13Z	en
dc.date.issued	2010-05-15	en
dc.identifier.citation	Bioinformatics 26(10):1372-1373 15 May 2010	en
dc.identifier.uri	http://hdl.handle.net/2292/12516	en
dc.description.abstract	Bayesian analysis through programs like BEAST (Drummond and Rumbaut, 2007) and MrBayes (Huelsenbeck et al., 2001) provides a powerful method for reconstruction of evolutionary relationships. One of the benefits of Bayesian methods is that well-founded estimates of uncertainty in models can be made available. So, for example, not only the mean time of a most recent common ancestor (tMRCA) is estimated, but also the spread. This distribution over model space is represented by a set of trees, which can be rather large and difficult to interpret. DensiTree is a tool that helps navigating these sets of trees.	en
dc.language	eng	en
dc.publisher	Oxford University Press	en
dc.relation.ispartofseries	Bioinformatics	en
dc.rights	Items in ResearchSpace are protected by copyright, with all rights reserved, unless otherwise indicated. Previously published items are made available in accordance with the copyright policy of the publisher. Details obtained from http://www.sherpa.ac.uk/romeo/issn/1367-4803/	en
dc.rights.uri	https://researchspace.auckland.ac.nz/docs/uoa-docs/rights.htm	en
dc.subject	Bayes Theorem	en
dc.subject	Computational Biology	en
dc.subject	Evolution, Molecular	en
dc.subject	Models, Genetic	en
dc.subject	Phylogeny	en
dc.subject	Software	en
dc.title	DensiTree: making sense of sets of phylogenetic trees.	en
dc.type	Journal Article	en
dc.identifier.doi	10.1093/bioinformatics/btq110	en
pubs.issue	10	en
pubs.begin-page	1372	en
pubs.volume	26	en
dc.rights.holder	Copyright: Oxford University Press; The Author	en
dc.identifier.pmid	20228129	en
pubs.end-page	1373	en
dc.rights.accessrights	http://purl.org/eprint/accessRights/RestrictedAccess	en
pubs.subtype	Article	en
pubs.elements-id	261147	en
pubs.org-id	Science	en
pubs.org-id	School of Computer Science	en
dc.identifier.eissn	1367-4811	en
dc.identifier.pii	btq110	en
pubs.record-created-at-source-date	2012-02-22	en
pubs.dimensions-id	20228129	en