dc.contributor.author |
McCann, Honour C |
|
dc.contributor.author |
Li, Li |
|
dc.contributor.author |
Liu, Yifei |
|
dc.contributor.author |
Li, Dawei |
|
dc.contributor.author |
Pan, Hui |
|
dc.contributor.author |
Zhong, Caihong |
|
dc.contributor.author |
Rikkerink, Erik HA |
|
dc.contributor.author |
Templeton, Matthew D |
|
dc.contributor.author |
Straub, Christina |
|
dc.contributor.author |
Colombi, Elena |
|
dc.contributor.author |
Rainey, Paul B |
|
dc.contributor.author |
Huang, Hongwen |
|
dc.coverage.spatial |
England |
|
dc.date.accessioned |
2021-01-12T01:46:03Z |
|
dc.date.available |
2021-01-12T01:46:03Z |
|
dc.date.issued |
2017-4 |
|
dc.identifier.citation |
Genome biology and evolution 9(4):932-944 Apr 2017 |
|
dc.identifier.issn |
1759-6653 |
|
dc.identifier.uri |
https://hdl.handle.net/2292/54174 |
|
dc.description.abstract |
Recurring epidemics of kiwifruit (Actinidia spp.) bleeding canker disease are caused by Pseudomonas syringae pv. actinidiae (Psa). In order to strengthen understanding of population structure, phylogeography, and evolutionary dynamics, we isolated Pseudomonas from cultivated and wild kiwifruit across six provinces in China. Based on the analysis of 80 sequenced Psa genomes, we show that China is the origin of the pandemic lineage but that strain diversity in China is confined to just a single clade. In contrast, Korea and Japan harbor strains from multiple clades. Distinct independent transmission events marked introduction of the pandemic lineage into New Zealand, Chile, Europe, Korea, and Japan. Despite high similarity within the core genome and minimal impact of within-clade recombination, we observed extensive variation even within the single clade from which the global pandemic arose. |
|
dc.format.medium |
Print |
|
dc.language |
eng |
|
dc.publisher |
Oxford University Press (OUP) |
|
dc.relation.ispartofseries |
Genome biology and evolution |
|
dc.rights |
Items in ResearchSpace are protected by copyright, with all rights reserved, unless otherwise indicated. Previously published items are made available in accordance with the copyright policy of the publisher. |
|
dc.rights.uri |
https://researchspace.auckland.ac.nz/docs/uoa-docs/rights.htm |
|
dc.rights.uri |
https://creativecommons.org/licenses/by-nc/4.0/ |
|
dc.subject |
Pseudomonas syringae |
|
dc.subject |
Actinidia |
|
dc.subject |
Fruit |
|
dc.subject |
Plant Diseases |
|
dc.subject |
China |
|
dc.subject |
New Zealand |
|
dc.subject |
Genetic Variation |
|
dc.subject |
Pandemics |
|
dc.subject |
Phylogeography |
|
dc.subject |
bacterial plant pathogen |
|
dc.subject |
disease emergence |
|
dc.subject |
genomic epidemiology |
|
dc.subject |
pathogen evolution |
|
dc.subject |
plant-microbe interactions |
|
dc.subject |
Actinidia |
|
dc.subject |
China |
|
dc.subject |
Fruit |
|
dc.subject |
Genetic Variation |
|
dc.subject |
New Zealand |
|
dc.subject |
Pandemics |
|
dc.subject |
Phylogeography |
|
dc.subject |
Plant Diseases |
|
dc.subject |
Pseudomonas syringae |
|
dc.subject |
Science & Technology |
|
dc.subject |
Life Sciences & Biomedicine |
|
dc.subject |
Evolutionary Biology |
|
dc.subject |
Genetics & Heredity |
|
dc.subject |
pathogen evolution |
|
dc.subject |
genomic epidemiology |
|
dc.subject |
bacterial plant pathogen |
|
dc.subject |
plant-microbe interactions |
|
dc.subject |
disease emergence |
|
dc.subject |
SYRINGAE PV. ACTINIDIAE |
|
dc.subject |
PATHOGEN PSEUDOMONAS-SYRINGAE |
|
dc.subject |
BACTERIAL CANKER |
|
dc.subject |
PLANT PATHOGEN |
|
dc.subject |
1ST REPORT |
|
dc.subject |
COMPARATIVE GENOMICS |
|
dc.subject |
DICKEYA-DADANTII |
|
dc.subject |
CAUSAL AGENT |
|
dc.subject |
GENES |
|
dc.subject |
HOSTS |
|
dc.subject |
bacterial plant pathogen |
|
dc.subject |
disease emergence |
|
dc.subject |
genomic epidemiology |
|
dc.subject |
pathogen evolution |
|
dc.subject |
plant-microbe interactions |
|
dc.subject |
Actinidia |
|
dc.subject |
China |
|
dc.subject |
Fruit |
|
dc.subject |
Genetic Variation |
|
dc.subject |
New Zealand |
|
dc.subject |
Pandemics |
|
dc.subject |
Phylogeography |
|
dc.subject |
Plant Diseases |
|
dc.subject |
Pseudomonas syringae |
|
dc.subject |
0604 Genetics |
|
dc.subject |
Infection |
|
dc.subject |
0601 Biochemistry and Cell Biology |
|
dc.subject |
0603 Evolutionary Biology |
|
dc.subject |
0604 Genetics |
|
dc.title |
Origin and Evolution of the Kiwifruit Canker Pandemic. |
|
dc.type |
Journal Article |
|
dc.identifier.doi |
10.1093/gbe/evx055 |
|
pubs.issue |
4 |
|
pubs.begin-page |
932 |
|
pubs.volume |
9 |
|
dc.date.updated |
2020-12-02T03:36:26Z |
|
dc.rights.holder |
Copyright: The author |
en |
pubs.author-url |
https://www.ncbi.nlm.nih.gov/pubmed/28369338 |
|
pubs.end-page |
944 |
|
pubs.publication-status |
Published |
|
dc.rights.accessrights |
http://purl.org/eprint/accessRights/OpenAccess |
en |
pubs.subtype |
Research Support, Non-U.S. Gov't |
|
pubs.subtype |
research-article |
|
pubs.subtype |
Journal Article |
|
pubs.elements-id |
634013 |
|
dc.identifier.eissn |
1759-6653 |
|
dc.identifier.pii |
3091237 |
|
pubs.online-publication-date |
2017-4-1 |
|