dc.contributor.author |
Geoghegan, Jemma L |
|
dc.contributor.author |
Douglas, Jordan |
|
dc.contributor.author |
Ren, Xiaoyun |
|
dc.contributor.author |
Storey, Matthew |
|
dc.contributor.author |
Hadfield, James |
|
dc.contributor.author |
Silander, Olin K |
|
dc.contributor.author |
Freed, Nikki E |
|
dc.contributor.author |
Jelley, Lauren |
|
dc.contributor.author |
Jefferies, Sarah |
|
dc.contributor.author |
Sherwood, Jillian |
|
dc.contributor.author |
Paine, Shevaun |
|
dc.contributor.author |
Huang, Sue |
|
dc.contributor.author |
Sporle, Andrew |
|
dc.contributor.author |
Baker, Michael G |
|
dc.contributor.author |
Murdoch, David R |
|
dc.contributor.author |
Drummond, Alexei J |
|
dc.contributor.author |
Welch, David |
|
dc.contributor.author |
Simpson, Colin R |
|
dc.contributor.author |
French, Nigel |
|
dc.contributor.author |
Holmes, Edward C |
|
dc.contributor.author |
de Ligt, Joep |
|
dc.coverage.spatial |
United States |
|
dc.date.accessioned |
2021-06-15T03:30:52Z |
|
dc.date.available |
2021-06-15T03:30:52Z |
|
dc.date.issued |
2021-5 |
|
dc.identifier.citation |
Emerging infectious diseases 27(5):1317-1322 May 2021 |
|
dc.identifier.issn |
1080-6040 |
|
dc.identifier.uri |
https://hdl.handle.net/2292/55317 |
|
dc.description.abstract |
Real-time genomic sequencing has played a major role in tracking the global spread of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), contributing greatly to disease mitigation strategies. In August 2020, after having eliminated the virus, New Zealand experienced a second outbreak. During that outbreak, New Zealand used genomic sequencing in a primary role, leading to a second elimination of the virus. We generated genomes from 78% of the laboratory-confirmed samples of SARS-CoV-2 from the second outbreak and compared them with the available global genomic data. Genomic sequencing rapidly identified that virus causing the second outbreak in New Zealand belonged to a single cluster, thus resulting from a single introduction. However, successful identification of the origin of this outbreak was impeded by substantial biases and gaps in global sequencing data. Access to a broader and more heterogenous sample of global genomic data would strengthen efforts to locate the source of any new outbreaks. |
|
dc.format.medium |
Print |
|
dc.language |
eng |
|
dc.publisher |
Centers for Disease Control and Prevention (CDC) |
|
dc.relation.ispartofseries |
Emerging infectious diseases |
|
dc.rights |
Items in ResearchSpace are protected by copyright, with all rights reserved, unless otherwise indicated. Previously published items are made available in accordance with the copyright policy of the publisher. |
|
dc.rights.uri |
https://researchspace.auckland.ac.nz/docs/uoa-docs/rights.htm |
|
dc.rights.uri |
https://creativecommons.org/licenses/by/4.0/ |
|
dc.rights.uri |
https://wwwnc.cdc.gov/eid/about/general |
|
dc.subject |
2019 novel coronavirus disease |
|
dc.subject |
COVID-19 |
|
dc.subject |
New Zealand |
|
dc.subject |
SARS-CoV-2 |
|
dc.subject |
coronavirus disease |
|
dc.subject |
genomics |
|
dc.subject |
infectious disease |
|
dc.subject |
respiratory infections |
|
dc.subject |
severe acute respiratory syndrome coronavirus 2 |
|
dc.subject |
viruses |
|
dc.subject |
zoonoses |
|
dc.subject |
1103 Clinical Sciences |
|
dc.subject |
1108 Medical Microbiology |
|
dc.subject |
1117 Public Health and Health Services |
|
dc.title |
Use of Genomics to Track Coronavirus Disease Outbreaks, New Zealand. |
|
dc.type |
Journal Article |
|
dc.identifier.doi |
10.3201/eid2705.204579 |
|
pubs.issue |
5 |
|
pubs.begin-page |
1317 |
|
pubs.volume |
27 |
|
dc.date.updated |
2021-05-18T19:29:27Z |
|
dc.rights.holder |
Copyright: The author |
en |
pubs.author-url |
https://www.ncbi.nlm.nih.gov/pubmed/33900175 |
|
pubs.end-page |
1322 |
|
pubs.publication-status |
Published |
|
dc.rights.accessrights |
http://purl.org/eprint/accessRights/OpenAccess |
en |
pubs.subtype |
research-article |
|
pubs.subtype |
Journal Article |
|
pubs.elements-id |
853035 |
|
dc.identifier.eissn |
1080-6059 |
|