dc.contributor.author |
O'Toole, Áine |
|
dc.contributor.author |
Hill, Verity |
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dc.contributor.author |
Pybus, Oliver G |
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dc.contributor.author |
Watts, Alexander |
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dc.contributor.author |
Bogoch, Issac I |
|
dc.contributor.author |
Khan, Kamran |
|
dc.contributor.author |
Messina, Jane P |
|
dc.contributor.author |
COVID-19 Genomics UK (COG-UK) consortium |
|
dc.contributor.author |
Network for Genomic Surveillance in South Africa (NGS-SA) |
|
dc.contributor.author |
Brazil-UK CADDE Genomic Network |
|
dc.contributor.author |
Tegally, Houriiyah |
|
dc.contributor.author |
Lessells, Richard R |
|
dc.contributor.author |
Giandhari, Jennifer |
|
dc.contributor.author |
Pillay, Sureshnee |
|
dc.contributor.author |
Tumedi, Kefentse Arnold |
|
dc.contributor.author |
Nyepetsi, Gape |
|
dc.contributor.author |
Kebabonye, Malebogo |
|
dc.contributor.author |
Matsheka, Maitshwarelo |
|
dc.contributor.author |
Mine, Madisa |
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dc.contributor.author |
Tokajian, Sima |
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dc.contributor.author |
Hassan, Hamad |
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dc.contributor.author |
Salloum, Tamara |
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dc.contributor.author |
Merhi, Georgi |
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dc.contributor.author |
Koweyes, Jad |
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dc.contributor.author |
Geoghegan, Jemma L |
|
dc.contributor.author |
de Ligt, Joep |
|
dc.contributor.author |
Ren, Xiaoyun |
|
dc.contributor.author |
Storey, Matthew |
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dc.contributor.author |
Freed, Nikki E |
|
dc.contributor.author |
Pattabiraman, Chitra |
|
dc.contributor.author |
Prasad, Pramada |
|
dc.contributor.author |
Desai, Anita S |
|
dc.contributor.author |
Vasanthapuram, Ravi |
|
dc.contributor.author |
Schulz, Thomas F |
|
dc.contributor.author |
Steinbrück, Lars |
|
dc.contributor.author |
Stadler, Tanja |
|
dc.contributor.author |
Swiss Viollier Sequencing Consortium |
|
dc.contributor.author |
Parisi, Antonio |
|
dc.contributor.author |
Bianco, Angelica |
|
dc.contributor.author |
García de Viedma, Darío |
|
dc.contributor.author |
Buenestado-Serrano, Sergio |
|
dc.contributor.author |
Borges, Vítor |
|
dc.contributor.author |
Isidro, Joana |
|
dc.contributor.author |
Duarte, Sílvia |
|
dc.contributor.author |
Gomes, João Paulo |
|
dc.contributor.author |
Zuckerman, Neta S |
|
dc.contributor.author |
Mandelboim, Michal |
|
dc.contributor.author |
Mor, Orna |
|
dc.contributor.author |
Seemann, Torsten |
|
dc.contributor.author |
Arnott, Alicia |
|
dc.contributor.author |
Draper, Jenny |
|
dc.contributor.author |
Gall, Mailie |
|
dc.contributor.author |
Rawlinson, William |
|
dc.contributor.author |
Deveson, Ira |
|
dc.contributor.author |
Schlebusch, Sanmarié |
|
dc.contributor.author |
McMahon, Jamie |
|
dc.contributor.author |
Leong, Lex |
|
dc.contributor.author |
Lim, Chuan Kok |
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dc.contributor.author |
Chironna, Maria |
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dc.contributor.author |
Loconsole, Daniela |
|
dc.contributor.author |
Bal, Antonin |
|
dc.contributor.author |
Josset, Laurence |
|
dc.contributor.author |
Holmes, Edward |
|
dc.contributor.author |
St George, Kirsten |
|
dc.contributor.author |
Lasek-Nesselquist, Erica |
|
dc.contributor.author |
Sikkema, Reina S |
|
dc.contributor.author |
Oude Munnink, Bas |
|
dc.contributor.author |
Koopmans, Marion |
|
dc.contributor.author |
Brytting, Mia |
|
dc.contributor.author |
Sudha Rani, V |
|
dc.contributor.author |
Pavani, S |
|
dc.contributor.author |
Smura, Teemu |
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dc.contributor.author |
Heim, Albert |
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dc.contributor.author |
Kurkela, Satu |
|
dc.contributor.author |
Umair, Massab |
|
dc.contributor.author |
Salman, Muhammad |
|
dc.contributor.author |
Bartolini, Barbara |
|
dc.contributor.author |
Rueca, Martina |
|
dc.contributor.author |
Drosten, Christian |
|
dc.contributor.author |
Wolff, Thorsten |
|
dc.contributor.author |
Silander, Olin |
|
dc.contributor.author |
Eggink, Dirk |
|
dc.contributor.author |
Reusken, Chantal |
|
dc.contributor.author |
Vennema, Harry |
|
dc.contributor.author |
Park, Aekyung |
|
dc.contributor.author |
Carrington, Christine |
|
dc.contributor.author |
Sahadeo, Nikita |
|
dc.contributor.author |
Carr, Michael |
|
dc.contributor.author |
Gonzalez, Gabo |
|
dc.contributor.author |
SEARCH Alliance San Diego |
|
dc.contributor.author |
National Virus Reference Laboratory |
|
dc.contributor.author |
SeqCOVID-Spain |
|
dc.contributor.author |
Danish Covid-19 Genome Consortium (DCGC) |
|
dc.contributor.author |
Communicable Diseases Genomic Network (CDGN) |
|
dc.contributor.author |
Dutch National SARS-CoV-2 surveillance program |
|
dc.contributor.author |
Division of Emerging Infectious Diseases (KDCA) |
|
dc.contributor.author |
de Oliveira, Tulio |
|
dc.contributor.author |
Faria, Nuno |
|
dc.contributor.author |
Rambaut, Andrew |
|
dc.contributor.author |
Kraemer, Moritz UG |
|
dc.coverage.spatial |
England |
|
dc.date.accessioned |
2023-11-05T21:01:28Z |
|
dc.date.available |
2023-11-05T21:01:28Z |
|
dc.date.issued |
2021-01 |
|
dc.identifier.citation |
(2021). Wellcome Open Research, 6, 121-. |
|
dc.identifier.issn |
2398-502X |
|
dc.identifier.uri |
https://hdl.handle.net/2292/66420 |
|
dc.description.abstract |
Late in 2020, two genetically-distinct clusters of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) with mutations of biological concern were reported, one in the United Kingdom and one in South Africa. Using a combination of data from routine surveillance, genomic sequencing and international travel we track the international dispersal of lineages B.1.1.7 and B.1.351 (variant 501Y-V2). We account for potential biases in genomic surveillance efforts by including passenger volumes from location of where the lineage was first reported, London and South Africa respectively. Using the software tool grinch (global report investigating novel coronavirus haplotypes), we track the international spread of lineages of concern with automated daily reports, Further, we have built a custom tracking website (cov-lineages.org/global_report.html) which hosts this daily report and will continue to include novel SARS-CoV-2 lineages of concern as they are detected. |
|
dc.format.medium |
Electronic-eCollection |
|
dc.language |
eng |
|
dc.publisher |
Faculty of 1000 |
|
dc.relation.ispartofseries |
Wellcome open research |
|
dc.rights |
Items in ResearchSpace are protected by copyright, with all rights reserved, unless otherwise indicated. Previously published items are made available in accordance with the copyright policy of the publisher. |
|
dc.rights.uri |
https://researchspace.auckland.ac.nz/docs/uoa-docs/rights.htm |
|
dc.rights.uri |
https://creativecommons.org/licenses/by/4.0/ |
|
dc.subject |
COVID-19 Genomics UK (COG-UK) consortium |
|
dc.subject |
Network for Genomic Surveillance in South Africa (NGS-SA) |
|
dc.subject |
Brazil-UK CADDE Genomic Network |
|
dc.subject |
Swiss Viollier Sequencing Consortium |
|
dc.subject |
SEARCH Alliance San Diego |
|
dc.subject |
National Virus Reference Laboratory |
|
dc.subject |
SeqCOVID-Spain |
|
dc.subject |
Danish Covid-19 Genome Consortium (DCGC) |
|
dc.subject |
Communicable Diseases Genomic Network (CDGN) |
|
dc.subject |
Dutch National SARS-CoV-2 surveillance program |
|
dc.subject |
Division of Emerging Infectious Diseases (KDCA) |
|
dc.subject |
B.1.1.7 |
|
dc.subject |
B.1.351 |
|
dc.subject |
N501Y |
|
dc.subject |
SARS-CoV-2 |
|
dc.subject |
air travel |
|
dc.subject |
coronavirus |
|
dc.subject |
genome sequencing |
|
dc.subject |
genomic epidemiology |
|
dc.subject |
genomic surveillance |
|
dc.subject |
genomics |
|
dc.subject |
pandemic |
|
dc.subject |
sequencing |
|
dc.subject |
surveillance |
|
dc.subject |
virus |
|
dc.subject |
32 Biomedical and Clinical Sciences |
|
dc.subject |
42 Health Sciences |
|
dc.subject |
Vaccine Related |
|
dc.subject |
Infectious Diseases |
|
dc.subject |
Genetics |
|
dc.subject |
Biodefense |
|
dc.subject |
Emerging Infectious Diseases |
|
dc.subject |
Pneumonia |
|
dc.subject |
Lung |
|
dc.subject |
Pneumonia & Influenza |
|
dc.subject |
Prevention |
|
dc.subject |
3 Good Health and Well Being |
|
dc.title |
Tracking the international spread of SARS-CoV-2 lineages B.1.1.7 and B.1.351/501Y-V2 with grinch. |
|
dc.type |
Journal Article |
|
dc.identifier.doi |
10.12688/wellcomeopenres.16661.2 |
|
pubs.begin-page |
121 |
|
pubs.volume |
6 |
|
dc.date.updated |
2023-10-28T02:43:01Z |
|
dc.rights.holder |
Copyright: The authors |
en |
dc.identifier.pmid |
34095513 (pubmed) |
|
pubs.author-url |
https://www.ncbi.nlm.nih.gov/pubmed/34095513 |
|
pubs.publication-status |
Published |
|
dc.rights.accessrights |
http://purl.org/eprint/accessRights/OpenAccess |
en |
pubs.subtype |
research-article |
|
pubs.subtype |
Journal Article |
|
pubs.elements-id |
856069 |
|
dc.identifier.eissn |
2398-502X |
|
pubs.record-created-at-source-date |
2023-10-28 |
|
pubs.online-publication-date |
2021-09-17 |
|