CELLULAR OPEN RESOURCE (COR): current status and future directions

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dc.contributor.author Garny, Alan en
dc.contributor.author Noble, D en
dc.contributor.author Hunter, Peter en
dc.contributor.author Kohl, P en
dc.date.accessioned 2011-08-16T03:43:16Z en
dc.date.issued 2009-05-28 en
dc.identifier.citation PHILOS T R SOC A 367(1895):1885-1905 28 May 2009 en
dc.identifier.issn 1364-503X en
dc.identifier.uri http://hdl.handle.net/2292/7409 en
dc.description.abstract The need for tools to aid the description and sharing of biological models was highlighted at the launch of the International Union of Physiological Sciences Physiome Project in 1997. This has resulted in the release, in 2001, of the CellML specifications (http://www. cellml.org/specifications/). CELLULAR OPEN RESOURCE (COR) was among the early adopters of this standard, eventually forming the first publicly available CellML-based modelling and collaboration environment. From the onset, COR was designed to provide an environment that could not only be used by experienced modellers, but also by experimentalists, teachers and students. It therefore tries to combine a user-friendly interface with a computationally efficient numerical engine. In this paper, we introduce the philosophy behind COR, explain its user interface and current functionality, including the editing and running of CellML files, highlight lessons learned from user feedback and problems experienced during the development of COR and conclude by exploring future development potential. en
dc.language EN en
dc.publisher ROYAL SOC en
dc.relation.ispartofseries PHILOS T R SOC A en
dc.rights Items in ResearchSpace are protected by copyright, with all rights reserved, unless otherwise indicated. Previously published items are made available in accordance with the copyright policy of the publisher. Details obtained from http://www.sherpa.ac.uk/romeo/issn/1364-503X/ en
dc.rights.uri https://researchspace.auckland.ac.nz/docs/uoa-docs/rights.htm en
dc.subject CellML en
dc.subject extensible markup language en
dc.subject markup language en
dc.subject modelling environment en
dc.subject computational biology en
dc.subject PHYSIOME PROJECT en
dc.subject MODELS en
dc.subject ENVIRONMENT en
dc.subject CELLML en
dc.subject TOOLS en
dc.title CELLULAR OPEN RESOURCE (COR): current status and future directions en
dc.type Journal Article en
dc.identifier.doi 10.1098/rsta.2008.0289 en
pubs.issue 1895 en
pubs.begin-page 1885 en
pubs.volume 367 en
dc.rights.holder Copyright: 2009 The Royal Society en
dc.identifier.pmid 19380317 en
pubs.end-page 1905 en
dc.rights.accessrights http://purl.org/eprint/accessRights/RestrictedAccess en
pubs.subtype Article en
pubs.elements-id 117016 en
pubs.org-id Bioengineering Institute en
pubs.org-id ABI Associates en
pubs.org-id Science en
pubs.org-id Science Research en
pubs.org-id Maurice Wilkins Centre (2010-2014) en
pubs.record-created-at-source-date 2011-10-21 en
pubs.dimensions-id 19380317 en

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